Bug getfasta with --outseq

tseemann / barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

GNU General Public License v3.0

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Bug getfasta with --outseq #68

Open johanzi opened 8 months ago

johanzi commented 8 months ago

I got this bug when using the --outseq :

[barrnap] Running: bedtools getfasta -s -name+ -fo 'out.fa' -fi '/tmp/DCK1ZXW9lo' -bed '/tmp/C6qa9HAUtf'
*****ERROR: Unrecognized parameter: -name+ *****

The problem seems to be line 171 of /bin/barrnap. I changed -name+ by -name and the flag --outseq is now working and generating a fasta file.

Charles-Lou commented 2 months ago

I have encountered the same problem, how can I solve it