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tseemann
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berokka
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
GNU General Public License v3.0
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Output unchanged despite clear overlaps
#29
mgarl-10
opened
1 year ago
0
Berokka conda installer is broken?
#28
Koen-vdl
opened
4 years ago
0
Error: NCBI C++ Exception:
#27
bitcometz
closed
4 years ago
1
berokka conda install has an issue with the Bio::SeqIO perl module
#26
Koen-vdl
closed
4 years ago
1
Orient and rotate mitochondrial genome
#25
sjackman
opened
6 years ago
2
Removing files messages should be --debug only
#24
tseemann
closed
5 years ago
0
Doesn't quite align to end and circ fails
#23
tseemann
closed
5 years ago
3
ctl.bls files not deleted
#22
tseemann
closed
5 years ago
0
Remove bad Canu contigs eg. covStat<=0 or reads=1
#21
tseemann
opened
6 years ago
0
Conda install doesn't exist
#20
tseemann
closed
5 years ago
1
This should return the opposite
#19
tseemann
closed
6 years ago
0
check_deps() should check db/ too
#18
tseemann
closed
6 years ago
0
Add --test option to help everyone
#17
tseemann
closed
6 years ago
0
Add --check option to check deps
#16
tseemann
closed
6 years ago
0
--help returns 1 not 0
#15
tseemann
closed
6 years ago
1
Filter out pacbio control sequence
#14
tseemann
closed
6 years ago
0
Accidently trims whole sequence from 3967 bp => 0 bp
#13
tseemann
closed
6 years ago
1
MSG: trunc start,end -- there was no end for 1
#12
tseemann
closed
6 years ago
1
--outdir '.' and --force don't mix
#11
tseemann
closed
6 years ago
0
For --keepfiles use FASTAID.suffix ?
#10
tseemann
opened
6 years ago
0
Add some base errors to the last test.fna sequence overhang
#9
tseemann
closed
6 years ago
1
Small contigs cause reverse blast hit results and trim fail
#8
tseemann
closed
6 years ago
2
Add orientation to origin support
#7
tseemann
opened
6 years ago
0
Add TRAVIS support
#6
tseemann
closed
6 years ago
0
Brew install doesn't exist
#5
tseemann
closed
5 years ago
1
Add 'circular=true' to successfull trimmages
#4
tseemann
closed
6 years ago
0
Add check to ensure --readlen is < contig length
#3
kwongj
closed
6 years ago
2
Error on undefined value
#2
AnnaSyme
closed
6 years ago
2
Make results.tab right justified?
#1
AnnaSyme
closed
6 years ago
1