tseemann ekidna issues - Githubissues

tseemann / ekidna

Assembly based core genome SNP alignments for bacteria

GNU General Public License v3.0

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faster infile processing

#18 chrisgulvik opened 4 years ago
2
Suggestion - allow a reference to be set

#17 BiologicalScientist opened 4 years ago
5
.vcf file only retained if -k option selected.

#16 BiologicalScientist opened 4 years ago
0
Paftools and k8 dependency names causing issues

#15 BiologicalScientist opened 4 years ago
1
no SNP found

#14 rchikhi closed 5 years ago
2
some extra dependencies..

#13 rchikhi opened 5 years ago
1
Paftools -> Bcftools vcf.gz conversion fails

#12 harish0201 opened 5 years ago
1
Add "-i FOFN" option

#11 tseemann closed 5 years ago
0
Use CIGAR lines to find micro deletions relative to the reference

#10 tseemann opened 5 years ago
0
Fix multisample VCF for unaligned positions

#9 tseemann opened 5 years ago
0
Output names are just sequential integers

#8 tseemann opened 5 years ago
0
Add --check paramter

#7 tseemann closed 5 years ago
0
Add TRAVIS tests

#6 tseemann opened 5 years ago
0
Support FASTQ files

#5 tseemann closed 5 years ago
1
Consider STOCKHOLM format for rapidnj

#4 tseemann opened 5 years ago
0
Run alignments in parallel

#3 tseemann opened 5 years ago
0
Put gaps in the uncovered regions

#2 tseemann closed 5 years ago
1
Make tree optional -t

#1 tseemann closed 5 years ago
1