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tseemann
/
ekidna
Assembly based core genome SNP alignments for bacteria
GNU General Public License v3.0
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faster infile processing
#18
chrisgulvik
opened
4 years ago
2
Suggestion - allow a reference to be set
#17
BiologicalScientist
opened
4 years ago
5
.vcf file only retained if -k option selected.
#16
BiologicalScientist
opened
4 years ago
0
Paftools and k8 dependency names causing issues
#15
BiologicalScientist
opened
4 years ago
1
no SNP found
#14
rchikhi
closed
5 years ago
2
some extra dependencies..
#13
rchikhi
opened
5 years ago
1
Paftools -> Bcftools vcf.gz conversion fails
#12
harish0201
opened
5 years ago
1
Add "-i FOFN" option
#11
tseemann
closed
5 years ago
0
Use CIGAR lines to find micro deletions relative to the reference
#10
tseemann
opened
5 years ago
0
Fix multisample VCF for unaligned positions
#9
tseemann
opened
5 years ago
0
Output names are just sequential integers
#8
tseemann
opened
5 years ago
0
Add --check paramter
#7
tseemann
closed
5 years ago
0
Add TRAVIS tests
#6
tseemann
opened
5 years ago
0
Support FASTQ files
#5
tseemann
closed
5 years ago
1
Consider STOCKHOLM format for rapidnj
#4
tseemann
opened
5 years ago
0
Run alignments in parallel
#3
tseemann
opened
5 years ago
0
Put gaps in the uncovered regions
#2
tseemann
closed
5 years ago
1
Make tree optional -t
#1
tseemann
closed
5 years ago
1