neuA.fta headers - Githubissues

tseemann / legsta

🍗⭐ In silico Legionella pneumophila Sequence Based Typing

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neuA.fta headers #12

Closed motroy closed 4 years ago

motroy commented 4 years ago

Hi @tseemann,

we found a discrepancy in the fta file for the neuA loci. Two header formats exist:

neuA_xx neuAh_xx

was this intentional? may this affect the results (i.e. unassigned allele for this loci, etc)?

thanks, Yair

tseemann commented 4 years ago

Sorry i missed this report while i was on long summer break.

I have checked my code and luckily it does NOT affect the results. I only use the number in the FASTA ID - and just use the gene name from the .tfa filename itself.

You did a good job spotting that though - it could been a serious bug!

But I will fix it anyway.