ERROR: Could not find 'any2fasta'. Please install it and ensure it is in the PATH.

tseemann / legsta

🍗⭐ In silico Legionella pneumophila Sequence Based Typing

GNU General Public License v3.0

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Closed tbazilegith closed 1 year ago

tbazilegith commented 1 year ago

Hi Seemann, I got the is after I cloned the repository and rand this command

../bin/legsta .fna .gbk (while in the test directory)

ERROR: Could not find 'any2fasta'. Please install it and ensure it is in the PATH. which path? Any ideas? Thanks1 TJ

tbazilegith commented 1 year ago

I installed any2fasta and got it in the path, but got this now Found 'isPcr' =>USER/legsta/bin/isPcr ERROR: Can not run isPcr any ideas? Thanks!

tbazilegith commented 1 year ago

Figured it out No worries!

tseemann commented 1 year ago

Glad you got it sorted @tbazilegith

The conda method is the best, it will install all the dependneces for you.