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tseemann / mlst

:id: Scan contig files against PubMLST typing schemes
GNU General Public License v2.0
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Does mlst have an issue with allele sequence headers contain periods? Confirmed. #100

Closed slvrshot closed 3 years ago

slvrshot commented 3 years ago

For example I successfully built a db for ngstar (no error messages) and reload it, but mlst doesn't call anything. Is it because my sequence headers look like this?

mtrR_10.0 mtrR_100.0 penA_10.001

...etc.

slvrshot commented 3 years ago

I ran an MLST scheme successfully and then went into the database and added a ".0" to one of the known allele calls and mlst failed to find the allele. I changed the name back to the original sequence header and it found it.