Problem updating mlst databases

tseemann / mlst

:id: Scan contig files against PubMLST typing schemes

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Problem updating mlst databases #107

Open eduardopdev opened 2 years ago

eduardopdev commented 2 years ago

I tried using mlst-download_pub_mlst following the "Updating the database" steps from the doc, but it only downloads a xml file, not the fasta files for making the blast database. Any sugestion on what I might be doing wrong?

alexkeeley commented 2 years ago

I had same issue and came across this reply: https://github.com/tseemann/mlst/issues/104#issuecomment-940154432

It has fixed the issue for me too.