Failed to install latest version (v2.19.0) through conda

[llk578496]

Hi,

I just tried to install the latest version (v2.19.0) through conda, but seems it fails and could only install older version (v2.11.0). May I know is there are way to install the latest version through conda?

conda install -c conda-forge -c bioconda -c defaults mlst

Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: done

##Package Plan ##

environment location: /home/gilmansiu3/miniconda3

added / updated specs:

• mlst

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
mlst-2.11                  |                0        10.8 MB  bioconda
perl-moo-2.001000          |          pl526_2          42 KB  bioconda
------------------------------------------------------------
                                       Total:        10.9 MB

The following NEW packages will be INSTALLED:

mlst bioconda/linux-64::mlst-2.11-0 perl-bioperl bioconda/linux-64::perl-bioperl-1.6.924-4 perl-class-method~ bioconda/linux-64::perl-class-method-modifiers-2.12-pl526_0 perl-devel-global~ bioconda/linux-64::perl-devel-globaldestruction-0.14-pl526_0 perl-module-runti~ bioconda/linux-64::perl-module-runtime-0.016-pl526_1 perl-moo bioconda/linux-64::perl-moo-2.001000-pl526_2 perl-role-tiny bioconda/noarch::perl-role-tiny-2.000008-pl526_0 perl-sub-exporter~ bioconda/linux-64::perl-sub-exporter-progressive-0.001013-pl526_0 perl-threaded bioconda/linux-64::perl-threaded-5.26.0-0 perl-yaml bioconda/noarch::perl-yaml-1.29-pl526_0 pip conda-forge/noarch::pip-21.3.1-pyhd8ed1ab_0 wheel conda-forge/noarch::wheel-0.37.0-pyhd8ed1ab_1

Proceed ([y]/n)? n

CondaSystemExit: Exiting.

[rpetit3]

Hi @llk578496 I wonder if this will work for you:

conda create -n mlst -c conda-forge -c bioconda -c defaults 'mlst=2.19.0'
conda activate mlst
mlst --version

[llk578496]

Hi @rpetit3 I used mamba because it seems to be faster and it works!

mamba create -n mlst -c conda-forge -c bioconda -c defaults 'mlst=2.19.0'

Thanks a lot!

[rpetit3]

mamba is the best! Glad you got it to work!