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tseemann / mlst

:id: Scan contig files against PubMLST typing schemes
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ST not given for cgMLST #135

Open mishmoods opened 1 year ago

mishmoods commented 1 year ago

Hi. I am using the cgMLST scheme to test Gonorrhea samples. The output file does not provide an ST type for each sample. There is a number which specifies the allele at each locus, but no ST type.

gregorysprenger commented 10 months ago

Maybe it is novel? There is a section in the main readme that lists the differences in the missing sequence types: https://github.com/tseemann/mlst?tab=readme-ov-file#missing-data