search

tseemann / mlst

:id: Scan contig files against PubMLST typing schemes
GNU General Public License v2.0
199 stars 47 forks source link

Update Yersinia McNally scheme #50

Open miguelpmachado opened 6 years ago

miguelpmachado commented 6 years ago

Hi @tseemann, I updated the MLST DB with Enterobase Yersinia McNally scheme data downloaded yesterday. Because some times the Achtman scheme (ypseudotuberculosis) overrides McNally scheme and people might be interested in having the result for McNally scheme in auto-detection mode, I did the same but removed the ypseudotuberculosis scheme. I attached both DBs here in case you want to use them to update the repository DB. Cheers, Miguel

db_without_ypseudotuberculosis.tar.gz

db.tar.gz

tseemann commented 6 years ago

@miguelpmachado is it in PubMLST ?

miguelpmachado commented 6 years ago

Hi @tseemann, Both schemas are in PubMLST (McNally as Yersinia spp., and Achtman as Yersinia pseudotuberculosis), however the last update was in 2015. So I used Enterobase DB to update Yersinia McNally scheme and kept it as yersinia in the MLST DB.

bala-ruokavirasto commented 2 years ago

Dear Miguel,

May i know why this yersina spp, McNally scheme was removed from the updated mlst schemes?

Bala