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tseemann / mlst

:id: Scan contig files against PubMLST typing schemes
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Two simple issues: choose 2 schemes & header in the regular output #77

Open eneasdecarvalho opened 5 years ago

eneasdecarvalho commented 5 years ago

Hi. Two simple issues:

1 - Maybe it would help if user could choose 1 or more schemes in the --scheme option, similar to what is possible to --exclude option.

2 - Header could be included in the 'regular' output, similar to what occurs in --legacy output. The inclusion of the header could be an option for the 'regular' output.

tseemann commented 5 years ago

@eneasdecarvalho

  1. that might be possible

  2. you can't really have a header in regular output, because the scheme might not be the same for all the input files. if there was only one input file, then yes it could be possible.

eneasdecarvalho commented 4 years ago

thanks!