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tseemann / mlst

:id: Scan contig files against PubMLST typing schemes
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expanding --novel output to include matching alleles? #90

Open jdalsdurf opened 4 years ago

jdalsdurf commented 4 years ago

Love MLST and all tseemann related products.

Is there a way to output the allele sequence (in fasta format) that was used for final matching and calling of ST?. A flag to output the allele sequences similar to the --novel option.

Thanks.

JDA bioinfo fedaykin

tseemann commented 4 years ago

@jdalsdurf that is a reasonable request. i will try and add this feature.

nweerasu commented 2 years ago

Hello,

Also interested in this in order to easily create MLST alignments with all genes within genomes. Thank you! Nimalka