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tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
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README install information is outdated #147

Closed jkimsis closed 6 years ago

jkimsis commented 6 years ago

The tap homebrew/science is deprecated, and when trying to do brew tap tseemann/bioinformatics-linux it gives multiple errors like this:

Error: Invalid formula: /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/tseemann/homebrew-bioinformatics-linux/Formula/nullarbor.rb Calling 'depends_on ... => :perl' is disabled! There is no replacement. /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/tseemann/homebrew-bioinformatics-linux/Formula/nullarbor.rb:12:in `' Please report this to the tseemann/bioinformatics-linux tap! Or, even better, submit a PR to fix it!

tseemann commented 6 years ago

THanks for the reminder @jkimsis

I am very close to having a new Nullarbor package in brewsci/bio and bioconda!

jb2cool commented 6 years ago

I'd have a few users that would be very happy with this (Conda especially). Fingers crossed that it'll be happy on CentOS too.

tseemann commented 6 years ago

We use RHEL 7.x (Centos 7.x) here so it should.

DrAnneJ commented 6 years ago

Hi, Nullarbor is awesome but it was indeed very difficult to install...I will be very happy to use a new version easier to install ;-) And again thank you for your tools that are so usefull in microbial genomics !