MLST database not indicated

tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

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MLST database not indicated #251

Open deearahman opened 4 years ago

deearahman commented 4 years ago

Hi tseemann,

I'm wondering why is the mlst database blank. I did get the mlst result so I am assuming it was from the mlst/db/... Screenshot from 2019-12-04 16-23-55

Thanks, Dyana

tseemann commented 4 years ago

Hmmm, not sure! The code is:

realpath(dirname(which('mlst'))."/../db/blast/mlst.fa");

In your bash shell can you type

realpath "$(dirname $(which mlst))/../db/blast/mlst.fa"