Query: Mixed sample - separate reads?

tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

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Query: Mixed sample - separate reads? #267

Open peflanag opened 4 years ago

peflanag commented 4 years ago

Hi,

I'm not sure if this is possible but thought I would ask. I am working with mycobacteria and one of our samples is a mixed sample. I believe Karken can determine if samples are mixed and was wondering does it pick it up when you run Nullarbor? I am currently running a few samples to see. If it does, can you separate the reads? is it possible to separate reads in a mixed sample?

Cheers for any advice/tips!

tseemann commented 4 years ago

What species is mixed with what species?

peflanag commented 4 years ago

Hey, it’s a TB stain and mycobacterium avium complex.