Deleted isolates still present in MLST table

tseemann / nullarbor

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Deleted isolates still present in MLST table #268

Open pydupont opened 4 years ago

pydupont commented 4 years ago

Hi,

Hopefully this is not a known bug, but I couldn't find any issues mentioning it... I deleted isolates from the sample.tab file and ran make again in the nullarbor project. The deleted isolates are absent from all tables (as expected) with the exception of the MLST table.

I am using version 2.0.20191013

Cheers

tseemann commented 4 years ago

@pydupont thanks for the report - i think you've found a bug. i don't delete mlst.tab. I will fix.

again : 
        (rm -fr roary/ roary_*/ report/ core.* *.gff {denovo,resistome,virulome}.tab preview.* tree.* distances.tab && cd .. && /home/tseemann/git/nullarbor/bin/nullarbor.pl --prefill --auto --force)