tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
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Set tmp folder? #280

Open petroslad opened 3 years ago

petroslad commented 3 years ago

Hello @andersgs and all users,

Is there a way to make the pipeline use a directory i choose as its tmp folder. Apparently the pipeline filled the tmp folder with bam and sam files that it didn't delete after finished.

Would changing the $WORKDIR in each plugin work?

Thank you so much for your time.