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tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
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Error installing NULLARBOR #281

Open acgonzalezz opened 3 years ago

acgonzalezz commented 3 years ago

When I install miniconda3, i get the message:

UnsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment: Specifications:

I uninstall, and then install Miniconda2, and so I get the message:

bash: /home/qiime2/miniconda3/bin/conda: No such file or directory

What Miniconda should I install 2 or 3? and what command do I use for Nullarbor instalation? I am using:

conda install -c conda-forge -c bioconda -c defaults nullarbor

Thanks

llk578496 commented 2 years ago

Hi all, I got the exact same issue too. I failed to install through miniconda.

jb2cool commented 2 years ago

Install Nullarbor into its own conda environment, that way it can have its own version of Python separate to the version you are natively using.

Info on how to do this can be found here https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html

llk578496 commented 2 years ago

I have just installed nullarbor by creating an environment python=3.6.

Thank you very much for your help!