error running nullarbor skesa

tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

GNU General Public License v2.0

134 stars 37 forks source link

error running nullarbor skesa #288

Open BettyAC opened 3 years ago

BettyAC commented 3 years ago

I am getting the below error Memory provided is insufficient to do runs in 10 cycles for the read coverage. We find that 16 Gb for 20x coverage of a 5 Mb genome is usually sufficient make: *** [Makefile:133: s4/contigs.fa] Error 1 make: Leaving directory '...'

andersgs commented 3 years ago

Hi @BettyAC. How much RAM does the machine you are running have? And what organism are you running? skesa is memory intensive. If you are running on a machine with less than 32GB of RAM you are going to get that error.

BettyAC commented 3 years ago

Hi it has 128 GB ram and I am running TB

andersgs commented 3 years ago

Can you upload nullarbor.log, please?