search

tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
134 stars 37 forks source link

start with assembled genomes / cgMLST #297

Open shlomobl opened 2 years ago

shlomobl commented 2 years ago

Hi, 1) Is it possible to start the pipeline with assembled genomes? (if not, that would be a nice addition) 2) Can you add cgMLST to the analysis? (using PubMLST schemes) Thanks!

safrye commented 1 year ago

Have a look at https://github.com/tseemann/nullarbor/issues/243 for Torstens answer.