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tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
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Can't locate Bio/SeqIO.pm in @INC #300

Open claramicro opened 1 year ago

claramicro commented 1 year ago

Hello i am trying to install nullarbor. I have created a new env and donwload nullarbor and databases. When i write nullarbor.pl --check it give me an error Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /home/microsec/miniconda3/envs/nullarborenv/bin/../perl5 /home/microsec/miniconda3/envs/nullarborenv/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/microsec/miniconda3/envs/nullarborenv/lib/site_perl/5.26.2 /home/microsec/miniconda3/envs/nullarborenv/lib/5.26.2/x86_64-linux-thread-multi /home/microsec/miniconda3/envs/nullarborenv/lib/5.26.2 .) at /home/microsec/miniconda3/envs/nullarborenv/bin/../perl5/Nullarbor/Report.pm line 7. BEGIN failed--compilation aborted at /home/microsec/miniconda3/envs/nullarborenv/bin/../perl5/Nullarbor/Report.pm line 7. Compilation failed in require at /home/microsec/miniconda3/envs/nullarborenv/bin/nullarbor.pl line 24. BEGIN failed--compilation aborted at /home/microsec/miniconda3/envs/nullarborenv/bin/nullarbor.pl line 24.

nullarbor error

can anyone help me??

thanks you