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tseemann / nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
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Output single machine readable file with the whole report #60

Open andersgs opened 8 years ago

andersgs commented 8 years ago

For instance:

MLST_REPORT_START ... MLST_REPORT_END ALN_START ... ALN_END

etc...

Or, in JSON format.

This will make it easier to parse the report into a LIMs system or into R.

tseemann commented 7 years ago

How would you want the JSON arranged?

sample:
   assay1: 
   assay2:

or

assay:
   sample1: 
   sample2:

etc