Open scotan opened 4 years ago
I am not able to advise on matters of genetics or pathogenicity.
That said, to help I would need the full prokka.log
file, and possbily the contigs.fa
themselves.
The inlA
gene only occurs once in the database. The inlA_1
(not inlA-1
) would appear in Prokka if there were lots of broken pieces of it, or gene duplications.
Hi,
I have a question about the output genes. I used Prokka to predict listeria genes and I have many inlA genes predicted (inlA-1, inlA-2, inlA-3 ...). I am getting confused on how to interpret this information. Where can I find information about this inlA subtypes? And is it possible to get all these inlA genes in a single genome? I am trying to match this information with the virulent inlA that is predicted by VirulenceFinder but I am not sure which inlA is the one corresponding to the virulent inlA.
Thank you very much, Anna