I'd like to use prokka to find both viral and bacterial sequences. I was wondering whether there is a one-line way to do it or whether the only possible way right now is to run prokka using the Virus option and then inputting the resulting .gbk file as a --protein option into a second run under the Bacteria option?
I'd like to use prokka to find both viral and bacterial sequences. I was wondering whether there is a one-line way to do it or whether the only possible way right now is to run prokka using the Virus option and then inputting the resulting .gbk file as a --protein option into a second run under the Bacteria option?