prokka stalls on tbl2asn step + solved fix

tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

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prokka stalls on tbl2asn step + solved fix #556

Open DaLizardWizard opened 3 years ago

DaLizardWizard commented 3 years ago

Yes this is a known issue. Forever tbl2asn aims to solve this problem by "faking" tbl2asn version/date but in tbl2asn latest update they must have changed something.

wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz
gunzip tbl2asn.gz
chmod +x tbl2asn
cp tbl2asn /home/ec2-user/miniconda3/pkgs/tbl2asn-forever-25.7.2f-h516909a_0/bin/real-tbl2asn

this seems to fix the issue by replacing the forever tbl2asn version with the latest one.

971202 commented 3 years ago

The above method is used for me, but it is wrong if you download this in the ~/software/prokka-1.14.5/binaries/linux