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tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation
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Plasmid Annotations #612

Open Javaria-Ashraf opened 2 years ago

Javaria-Ashraf commented 2 years ago

Dear tseemann,

I want to only annotate plasmid sequences from an assembly file (contig.fa). Can you please guide how can i do this?

Thanks

J.A

valery-shap commented 2 years ago

Hello, I don't know how to do it using Prokka, but advice you: 1.extract plasmid contig by seqkit tool Seqkit grep your.fasta name_of_plasmid_contig > only_plasmid_contig.fasta 2.annotate with Prokka