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tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation
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What does the "het" says? #644

Closed fredericQC closed 2 years ago

fredericQC commented 2 years ago

Hi, When I use snippy-core, it prints out tables like this: 0 plasmid1 snp=314 del=1 ins=4 het=3 unaligned=12667 1 palsmid2 snp=563 del=4 ins=2 het=5 unaligned=16502 2 plasmid3 snp=1261 del=21 ins=8 het=0 unaligned=19473

What does the het means? I see in the code that it refers to heterogenous sites, but the input sequences I use are haploid plasmids.

Thanks!

fredericQC commented 2 years ago

Sorry, I meant to post this on snippy.