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tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation
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tbl2asn issues, again (in a M1 Macbook) #669

Open anbadilla opened 1 year ago

anbadilla commented 1 year ago

Trying to run Prokka in a M1 Mac and running into the error :sh:/usr/local/bin/tbl2asn: cannot execute binary file Could not determine version of tbl2asn - please install version 24.3 or higher

Wondering if someone has been able to fix it. I've replaced the tbl2asn several times and clearly has not worked. Thanks!

ypxyuan commented 1 year ago

Have you solve this problem? I had the same problem.

anbadilla commented 1 year ago

I did not solve it. I ended up using a remote server for my analysis. Sorry!

tomjevans commented 1 year ago

This stops prokka running on M1 or M2 chip. Looking at the NCBI website downloads tbl2asn has now been replaced by table2asn. tbl2asn does not run on M1/2 but table2asn does. I replaced the prokka download version of tbl2asn with the table2asn executable and renamed it tbl2asn - sadly this does not work as get the version number issue mentioned above. This needs a fix in the prokka code when calling this executable

zagrosman commented 1 year ago

Dear @tomjevans @anbadilla @ypxyuan

Check this instruction to fix tbl2ans problem