I am running prokka 1.14.6 version with the following command prokka --outdir annotation --prefix SPF544 --genus Legionella -- kingdom Bacteria SPF544.fasta from Pop!_ OS under conda environment.
However, it is showing following error
[11:17:32] This is prokka 1.14.6 [11:17:32] Written by Torsten Seemann <torsten.seemann@gmail.com> [11:17:32] Homepage is https://github.com/tseemann/prokka [11:17:32] Local time is Fri Aug 25 11:17:32 2023 [11:17:32] You are phdstudent1 [11:17:32] Operating system is linux [11:17:32] You have BioPerl 1.7.8 Argument "1.7.8" isn't numeric in numeric lt (<) at /home/phdstudent1/.conda/envs/prokka/bin/prokka line 259. [11:17:32] System has 16 cores. [11:17:32] Will use maximum of 8 cores. [11:17:32] Annotating as >>> Bacteria <<< [11:17:32] 'kingdom' is not a readable non-empty FASTA file
Hello,
I am running prokka 1.14.6 version with the following command
prokka --outdir annotation --prefix SPF544 --genus Legionella -- kingdom Bacteria SPF544.fastafrom Pop!_ OS under conda environment.However, it is showing following error
[11:17:32] This is prokka 1.14.6 [11:17:32] Written by Torsten Seemann <torsten.seemann@gmail.com> [11:17:32] Homepage is https://github.com/tseemann/prokka [11:17:32] Local time is Fri Aug 25 11:17:32 2023 [11:17:32] You are phdstudent1 [11:17:32] Operating system is linux [11:17:32] You have BioPerl 1.7.8 Argument "1.7.8" isn't numeric in numeric lt (<) at /home/phdstudent1/.conda/envs/prokka/bin/prokka line 259. [11:17:32] System has 16 cores. [11:17:32] Will use maximum of 8 cores. [11:17:32] Annotating as >>> Bacteria <<< [11:17:32] 'kingdom' is not a readable non-empty FASTA fileCould you please explain where is the problem?
Thanks,