how to use two gbk files as reference?

tseemann / snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

GNU General Public License v2.0

468 stars 113 forks source link

Closed mingjuhao closed 4 years ago

mingjuhao commented 4 years ago

Hi, for Brucella, there are two circular sequences in the cell. How can i merge the two gbk files as one in snippy? Thanks!

mingjuhao commented 4 years ago

I think i can use cat command very easily to merge the two files since snippy can use contigs as reference sequence.

tseemann commented 4 years ago

Tes Snippy supports multi-genbank files. Just cat them.