search

tseemann / snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment
GNU General Public License v2.0
477 stars 115 forks source link

Snippy install "Can't locate Bio/SeqIO.pm in @INC on version 4.6 conda install #383

Open Rob-murphys opened 4 years ago

Rob-murphys commented 4 years ago

I know this has been a issue previously but it has poped up again on the conda install of version 4.6. Is there a stable version that curently works through conda install?

jrober84 commented 4 years ago

I occasionally get this issue but it is usually the conda environment itself. I usually find the easiest way to solve it is with a new conda environment. You can also remove bioperl from the conda environment and snippy and then reinstall.

mredrejo commented 3 years ago

I have the same problem in Ubuntu 20.04.1 LTS, using either Conda or Brew installations. I could install Snippy on my MacBook with BigSur, but it is much slower...

BjoerlingTaul commented 3 years ago

How to solve the following problem, please! Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /home/qiime2/miniconda3/bin/../perl5 /home/qiime2/miniconda3/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/qiime2/miniconda3/lib/site_perl/5.26.2 /home/qiime2/miniconda3/lib/5.26.2/x86_64-linux-thread-multi /home/qiime2/miniconda3/lib/5.26.2 .) at /home/qiime2/miniconda3/bin/snippy line 15. BEGIN failed--compilation aborted at /home/qiime2/miniconda3/bin/snippy line 15. Thanks