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tseemann / snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment
GNU General Public License v2.0
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Any recommendation for a pathogenicity island finder software available in github? #448

Closed angeladelvalle closed 3 years ago

angeladelvalle commented 3 years ago

Hi, I am studying the virulence of some bacteria samples, and I would have heard about a few software for identifying them. Any recommendation?

andersgs commented 3 years ago

Not really. I did a quick google and found this: https://www.pathogenomics.sfu.ca/islandviewer/resources/ --- but not really tested. So, not an endorsement.

Best of luck.