tseemann / snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment
GNU General Public License v2.0
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Request to troubleshoot bcftools error encountered while installing snippy in macOS Sonoma 14.4.1 #589

Open Jeewan-Thapa opened 1 month ago

Jeewan-Thapa commented 1 month ago

Code used: conda config --add channels bioconda conda config --add channels conda-forge conda create --name snippy snippy

Results: Channels:

LibMambaUnsatisfiableError: Encountered problems while solving:

Could not solve for environment specs The following packages are incompatible └─ snippy is not installable because there are no viable options ├─ snippy [4.4.0|4.4.1|4.4.3] would require │ └─ bcftools >=1.8 , which does not exist (perhaps a missing channel); ├─ snippy [4.4.3|4.4.5] would require │ └─ bcftools >=1.9 , which does not exist (perhaps a missing channel); ├─ snippy 4.4.5 would require │ └─ bcftools >=1.9,<1.10 , which does not exist (perhaps a missing channel); └─ snippy [4.5.0|4.5.1|4.6.0] would require └─ bcftools >=1.10 , which does not exist (perhaps a missing channel).

ammaraziz commented 1 month ago

bcftools is not available for arm platforms https://anaconda.org/bioconda/bcftools

Use Rosetta emulation on macos arm machines https://support.apple.com/en-us/102527