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tseemann / snp-dists

Pairwise SNP distance matrix from a FASTA sequence alignment
GNU General Public License v3.0
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Molten output relative only to one sequence? #38

Open tseemann opened 4 years ago

tseemann commented 4 years ago

Would be good to do molten output relative to a ref seq, either provided, or by ID, or the 1st seq in the alignment?

O(N) work instead of O(N^2) and discarding.

zx8754 commented 3 years ago

Is this a related post?

Where they want to keep only unique rows, based on seq1 and seq2, regardless of order. Basically, melting a matrix that has upper or lower triangle set to NA.