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tseemann / snp-dists

Pairwise SNP distance matrix from a FASTA sequence alignment
GNU General Public License v3.0
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Molten output doesn't respect -b flag #39

Open m-a-martin opened 4 years ago

m-a-martin commented 4 years ago

When outputting in molten format with the -b flag, output should only include unique combinations instead of outputting all combinations.

tseemann commented 4 years ago

@m-a-martin -b Blank top left corner cell is about the output cell at (0,0) ?

m-a-martin commented 4 years ago

ah, sorry, that's my mistake, not sure how I mixed that up. in general though, a feature to only output either the upper or lower triangle of the matrix or only calculate/output unique combinations in the molten output would be useful, especially on very large datasets.