Open mbhall88 opened 4 years ago
Very nice script @mbhall88, thank you!
Perhaps it would be really useful to add a functionality to cluster the sequences according to their SNP distance. There are already R packages to treat such heatmaps; one of them allows to include use a precomputed phylogeny to cluster the heatmap (https://rdrr.io/cran/phytools/man/phylo.heatmap.html)
I would welcome a PR to add that functionality @guillemmasfiol
Hey @tseemann
I've created a (python) script for plotting the matrix output from this tool as an interactive heatmap which others might find useful.
Feel free to link to it from the README if you like, or I guess people can just find it here in the issues too.
Usage
Static example
Interactive example
heatmap.html.gz