Sequences with different lengths

tseemann / snp-dists

Pairwise SNP distance matrix from a FASTA sequence alignment

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Open asierFernandezP opened 1 year ago

asierFernandezP commented 1 year ago

Hi,

Is it possible to perform the snp-dists analysis with a fasta file of sequences with different lengths as input?

Thanks in advance,

Asier

kloetzl commented 1 year ago

No. snp-dists requires all sequences to be of identical length. If your sequences are of varying length you have to align them first.