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tskit-dev / msprime

Simulate genealogical trees and genomic sequence data using population genetic models
GNU General Public License v3.0
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Add benchmarks for msprime.mutate #1166

Open jeromekelleher opened 4 years ago

jeromekelleher commented 4 years ago

We should add some benchmarks to the ASV suite (#1165) so we can track the performance of the various mutate functions. These should be a lot faster than simulations, so it should be easier to benchmark.

I guess we'd want to benchmark all the different models on a small, medium and large tree sequence?

jeromekelleher commented 4 years ago

We'd want to have a fully baked mutation model API first though, I guess (#1070)