tskit-dev / msprime

Simulate genealogical trees and genomic sequence data using population genetic models
GNU General Public License v3.0
170 stars 84 forks source link

fix msmssweeps verification #2230

Closed GertjanBisschop closed 6 months ago

GertjanBisschop commented 6 months ago

Fixes the bugs in #2229. Also updates the download link for msms which was out of date.

codecov[bot] commented 6 months ago

Codecov Report

Merging #2230 (0a50c26) into main (4c80801) will not change coverage. The diff coverage is n/a.

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230/graphs/tree.svg?width=650&height=150&src=pr&token=1uZQV1KMkU&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev)](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) ```diff @@ Coverage Diff @@ ## main #2230 +/- ## ======================================= Coverage 91.52% 91.52% ======================================= Files 20 20 Lines 11334 11334 Branches 2302 2302 ======================================= Hits 10373 10373 Misses 523 523 Partials 438 438 ``` | [Flag](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) | Coverage Δ | | |---|---|---| | [C](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) | `91.52% <ø> (ø)` | | | [python](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) | `98.70% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev#carryforward-flags-in-the-pull-request-comment) to find out more. ------ [Continue to review full report in Codecov by Sentry](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230?src=pr&el=continue&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev). > **Legend** - [Click here to learn more](https://docs.codecov.io/docs/codecov-delta?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) > `Δ = absolute (impact)`, `ø = not affected`, `? = missing data` > Powered by [Codecov](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230?src=pr&el=footer&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev). Last update [4c80801...0a50c26](https://app.codecov.io/gh/tskit-dev/msprime/pull/2230?src=pr&el=lastupdated&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev). Read the [comment docs](https://docs.codecov.io/docs/pull-request-comments?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev).