tskit-dev / msprime

Simulate genealogical trees and genomic sequence data using population genetic models
GNU General Public License v3.0
170 stars 84 forks source link

Additional stats tests microsats #2241

Closed GertjanBisschop closed 6 months ago

GertjanBisschop commented 6 months ago

Added a few additional statistical tests based on the existing MatrixMutationModel statistical testing. No apparent issues.

codecov[bot] commented 6 months ago

Codecov Report

Merging #2241 (cd81d2a) into main (2fba2eb) will not change coverage. The diff coverage is n/a.

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241/graphs/tree.svg?width=650&height=150&src=pr&token=1uZQV1KMkU&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev)](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) ```diff @@ Coverage Diff @@ ## main #2241 +/- ## ======================================= Coverage 91.52% 91.52% ======================================= Files 20 20 Lines 11337 11337 Branches 2304 2304 ======================================= Hits 10376 10376 Misses 523 523 Partials 438 438 ``` | [Flag](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) | Coverage Δ | | |---|---|---| | [C](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) | `91.52% <ø> (ø)` | | | [python](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) | `98.70% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev#carryforward-flags-in-the-pull-request-comment) to find out more. ------ [Continue to review full report in Codecov by Sentry](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241?src=pr&el=continue&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev). > **Legend** - [Click here to learn more](https://docs.codecov.io/docs/codecov-delta?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev) > `Δ = absolute (impact)`, `ø = not affected`, `? = missing data` > Powered by [Codecov](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241?src=pr&el=footer&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev). Last update [2fba2eb...cd81d2a](https://app.codecov.io/gh/tskit-dev/msprime/pull/2241?src=pr&el=lastupdated&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev). Read the [comment docs](https://docs.codecov.io/docs/pull-request-comments?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=tskit-dev).