wrap union to deal with SLiM metadata

tskit-dev / pyslim

Tools for dealing with tree sequences coming to and from SLiM.

MIT License

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wrap union to deal with SLiM metadata #169

Open mufernando opened 3 years ago

mufernando commented 3 years ago

e.g., by adjusting the slim mutation ids in the metadata, and the generation

petrelharp commented 3 years ago

Things to do here are:

make SLiM mutation IDs not overlap
make SLiM individual IDs not overlap (and also adjust genome IDs accordingly)

... and, what exactly needs to happen with the times/generations? Anything else?

mufernando commented 3 years ago

never mind about the generation, this has to do with having to adjust the times if the two simulations were run for different amount of times. we could decide to deal with this within the pyslim.union though.

petrelharp commented 3 years ago

Right - so we need a

dt argument that allows for shifting of the times if the two ts were run for different amounts of time

petrelharp commented 2 years ago

Also see #105