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tskit-dev / pyslim

Tools for dealing with tree sequences coming to and from SLiM.
MIT License
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adjust to new nucleotide reference sequence location #206

Closed bhaller closed 2 years ago

bhaller commented 2 years ago

Now that https://github.com/MesserLab/SLiM/issues/180 is fixed, pyslim needs to look for the reference sequence in top-level metadata instead of in kastore, for file_version 0.7 and later, under the key ts.metadata["reference_sequence"].

petrelharp commented 2 years ago

Actually, it's in ts.reference_sequence :tada:. Closed in b34a853674abc67cc12a455f67ec13c6fa0246bd