tskit-dev / pyslim

Tools for dealing with tree sequences coming to and from SLiM.
MIT License
26 stars 23 forks source link

explain no adjustment needed for WF sims #319

Closed petrelharp closed 12 months ago

petrelharp commented 12 months ago

From the email list:

I am unsure whether I need to adjust the mutation, recombination rate and Ne by the generation time when recapitating with pyslim and adding neutral mutations with msprime. I have read many times the section about time units mismatch in pyslim manual (https://tskit.dev/pyslim/docs/latest/time_units.html), but most of the examples are nonWF oriented.

codecov-commenter commented 12 months ago

Codecov Report

Merging #319 (5ecb47c) into main (c352b09) will not change coverage. The diff coverage is n/a.

@@           Coverage Diff           @@
##             main     #319   +/-   ##
=======================================
  Coverage   95.65%   95.65%           
=======================================
  Files           8        8           
  Lines         621      621           
  Branches      131      131           
=======================================
  Hits          594      594           
  Misses         18       18           
  Partials        9        9           

:mega: We’re building smart automated test selection to slash your CI/CD build times. Learn more