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tskit-dev / tsbrowse

Utilities for evaluating inferred tree sequences
MIT License
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Show other mutation attributes as separate colours in 3D datashade? #123

Open jeromekelleher opened 9 months ago

jeromekelleher commented 9 months ago

Datashader supports shading multiple attributes of each pixel in different colours. I wonder if we could shade num_inheritors as another dimension? Might take some fiddling, but the examples here look like it might work:

https://datashader.org/getting_started/Pipeline.html#colormapping

https://datashader.org/getting_started/Pipeline.html#colormapping-3d-categorical-data

These are categorial though, so maybe num_inheritors wouldn't work. We could imagine having intron/exon or something as a categorial to shade by. Worth playing with a bit anyway I think.

savitakartik commented 9 months ago

Yes, this would be really cool with genome annotations! I'll have a go at this once we have the genome tracks in place.