tskit-dev tsconvert issues

tskit-dev / tsconvert

Utilities for converting tree sequences to and from other formats

MIT License

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issues

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No nexus reading/writing

#57 hyanwong opened 1 week ago
0
Export to BGEN

#56 hyanwong opened 2 weeks ago
1
Oxford phased haplotype file (.haps) + .sample export

#55 hyanwong opened 9 months ago
3
Fix codecov and update pre-commit.

#54 benjeffery closed 1 year ago
0
Remove new line from nextstrain newick

#53 benjeffery closed 1 year ago
1
Circle CI failing

#52 benjeffery closed 1 year ago
2
Newick keyname

#51 hyanwong closed 1 year ago
5
Require semicolon for newick?

#50 hyanwong opened 1 year ago
2
Create .gitignore

#49 hyanwong closed 1 year ago
4
Add ability to set time units when importing Newick

#48 hyanwong closed 1 year ago
4
from_newick does not import node names

#47 hyanwong closed 1 year ago
2
Fix CI

#46 benjeffery closed 1 year ago
3
Typo in setup.py

#45 hyanwong closed 1 year ago
4
ARG conversion functionality

#44 hyanwong opened 1 year ago
0
Newick seq len

#43 hyanwong closed 1 year ago
1
Update mergify config

#42 benjeffery closed 1 year ago
0
Add "span" argument to from_newick

#41 hyanwong closed 1 year ago
1
Allow from_newick to set the sequence length

#40 hyanwong closed 1 year ago
0
Set node metadata schema to json...

#39 hyanwong closed 1 year ago
1
Negative branch lengths

#38 szhan closed 1 year ago
3
Provenance recording

#37 benjeffery opened 2 years ago
0
Importing large newick files

#36 hyanwong opened 2 years ago
20
From sequence of newick trees?

#35 swamidass opened 2 years ago
1
Fix error message typo

#34 benjeffery closed 3 years ago
0
Add pandas and newick to install dependancies

#33 benjeffery opened 3 years ago
0
from_ms: assign samples to populations

#32 grahamgower opened 3 years ago
6
from_ms should do something useful with replicates

#31 grahamgower opened 3 years ago
3
from_ms raises dendropy.utility.error.UltrametricityError

#30 grahamgower opened 3 years ago
6
Add csv to metadata method

#29 benjeffery closed 3 years ago
3
Add brief roadmap

#28 benjeffery closed 3 years ago
1
Standardise API

#27 benjeffery opened 3 years ago
0
Rename newick metadata vars

#26 benjeffery closed 3 years ago
1
Set up docs

#25 benjeffery opened 3 years ago
0
Add github actions tests

#24 benjeffery opened 3 years ago
0
Modernise packaging

#23 jeromekelleher opened 3 years ago
0
Allow newick parsing to cope with non-ultrametric trees, zero length branches and import IDs to metadata

#22 benjeffery closed 3 years ago
1
Mergify: configuration update

#21 benjeffery closed 3 years ago
1
Add CLI functionality

#20 benjeffery opened 3 years ago
0
ARGON conversion tests

#19 gtsambos opened 3 years ago
1
Added method to convert ARGON output to a .trees file.

#18 gtsambos closed 3 years ago
4
Update workflow

#17 benjeffery closed 3 years ago
1
Upgrade to pytest

#16 benjeffery closed 3 years ago
1
Fix tests for tskit 0.3.6

#15 benjeffery closed 3 years ago
2
Newick + csv/tsv import

#14 benjeffery closed 3 years ago
2
Issues with newicks found in the wild

#13 benjeffery closed 3 years ago
1
networkx.DiGraph import

#12 winni2k opened 4 years ago
2
First pass at BEAST import.

#11 jeromekelleher opened 4 years ago
2
BEAST support

#10 jeromekelleher opened 4 years ago
0
Added basic support for Oriented forest input.

#9 jeromekelleher closed 5 years ago
2
Add oriented forest converter

#8 jeromekelleher closed 5 years ago
0