issues
search
tskit-dev
/
tsconvert
Utilities for converting tree sequences to and from other formats
MIT License
7
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
No nexus reading/writing
#57
hyanwong
opened
1 week ago
0
Export to BGEN
#56
hyanwong
opened
2 weeks ago
1
Oxford phased haplotype file (.haps) + .sample export
#55
hyanwong
opened
9 months ago
3
Fix codecov and update pre-commit.
#54
benjeffery
closed
1 year ago
0
Remove new line from nextstrain newick
#53
benjeffery
closed
1 year ago
1
Circle CI failing
#52
benjeffery
closed
1 year ago
2
Newick keyname
#51
hyanwong
closed
1 year ago
5
Require semicolon for newick?
#50
hyanwong
opened
1 year ago
2
Create .gitignore
#49
hyanwong
closed
1 year ago
4
Add ability to set time units when importing Newick
#48
hyanwong
closed
1 year ago
4
from_newick does not import node names
#47
hyanwong
closed
1 year ago
2
Fix CI
#46
benjeffery
closed
1 year ago
3
Typo in setup.py
#45
hyanwong
closed
1 year ago
4
ARG conversion functionality
#44
hyanwong
opened
1 year ago
0
Newick seq len
#43
hyanwong
closed
1 year ago
1
Update mergify config
#42
benjeffery
closed
1 year ago
0
Add "span" argument to from_newick
#41
hyanwong
closed
1 year ago
1
Allow from_newick to set the sequence length
#40
hyanwong
closed
1 year ago
0
Set node metadata schema to json...
#39
hyanwong
closed
1 year ago
1
Negative branch lengths
#38
szhan
closed
1 year ago
3
Provenance recording
#37
benjeffery
opened
2 years ago
0
Importing large newick files
#36
hyanwong
opened
2 years ago
20
From sequence of newick trees?
#35
swamidass
opened
2 years ago
1
Fix error message typo
#34
benjeffery
closed
3 years ago
0
Add pandas and newick to install dependancies
#33
benjeffery
opened
3 years ago
0
from_ms: assign samples to populations
#32
grahamgower
opened
3 years ago
6
from_ms should do something useful with replicates
#31
grahamgower
opened
3 years ago
3
from_ms raises dendropy.utility.error.UltrametricityError
#30
grahamgower
opened
3 years ago
6
Add csv to metadata method
#29
benjeffery
closed
3 years ago
3
Add brief roadmap
#28
benjeffery
closed
3 years ago
1
Standardise API
#27
benjeffery
opened
3 years ago
0
Rename newick metadata vars
#26
benjeffery
closed
3 years ago
1
Set up docs
#25
benjeffery
opened
3 years ago
0
Add github actions tests
#24
benjeffery
opened
3 years ago
0
Modernise packaging
#23
jeromekelleher
opened
3 years ago
0
Allow newick parsing to cope with non-ultrametric trees, zero length branches and import IDs to metadata
#22
benjeffery
closed
3 years ago
1
Mergify: configuration update
#21
benjeffery
closed
3 years ago
1
Add CLI functionality
#20
benjeffery
opened
3 years ago
0
ARGON conversion tests
#19
gtsambos
opened
3 years ago
1
Added method to convert ARGON output to a .trees file.
#18
gtsambos
closed
3 years ago
4
Update workflow
#17
benjeffery
closed
3 years ago
1
Upgrade to pytest
#16
benjeffery
closed
3 years ago
1
Fix tests for tskit 0.3.6
#15
benjeffery
closed
3 years ago
2
Newick + csv/tsv import
#14
benjeffery
closed
3 years ago
2
Issues with newicks found in the wild
#13
benjeffery
closed
3 years ago
1
networkx.DiGraph import
#12
winni2k
opened
4 years ago
2
First pass at BEAST import.
#11
jeromekelleher
opened
4 years ago
2
BEAST support
#10
jeromekelleher
opened
4 years ago
0
Added basic support for Oriented forest input.
#9
jeromekelleher
closed
5 years ago
2
Add oriented forest converter
#8
jeromekelleher
closed
5 years ago
0
Next