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tskit-dev / tskit

Population-scale genomics
MIT License
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Cythonized example of LWT interface #1124

Open jeromekelleher opened 3 years ago

jeromekelleher commented 3 years ago

We would like to use the code from @terhorst as an example of using the LWT interface in Cython:

Here is a Cythonized version of one of the C API examples from the docs:

https://github.com/terhorst/tskit_cython_example

Originally posted by @terhorst in https://github.com/tskit-dev/tskit/issues/1004#issuecomment-764716003

benjeffery commented 3 years ago

Awesome, thanks @terhorst. Yes, it would be best to bring this in and test it in CI.

jeromekelleher commented 3 years ago

@terhorst, would you like to copy this in as a PR? It would be good to give you git-credit in the tskit repo for figuring this out! I think a direct copy of what you have into a new directory lwt_interface/cython_example would be ideal. We can hook it up to CI then afterwards.