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tskit-dev
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tutorials
A set of tutorials for msprime and tskit.
Creative Commons Attribution 4.0 International
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Work on the stats/analysis tutorial
#281
gregorgorjanc
opened
1 month ago
1
Minor edits to what_is.md, getting_started.md, and terminology_and_concepts.md
#280
gregorgorjanc
closed
1 month ago
4
Suggested edits
#279
gregorgorjanc
closed
2 months ago
4
Minor tweaks to improve flow and clarity
#278
gregorgorjanc
closed
2 months ago
3
Cross coalescence rates: advanced analysis tutorial.
#277
hyanwong
opened
4 months ago
1
Update requirements for numpy 2
#276
hyanwong
closed
4 months ago
4
Backwards
#275
petrelharp
opened
5 months ago
1
Update terminology to reflect ARG paper
#274
hyanwong
closed
4 months ago
5
Revisit ARG descriptions and calling syntax
#273
hyanwong
closed
4 months ago
4
Add a note about filter_nodes=False for viz
#272
hyanwong
closed
6 months ago
0
Bump tqdm from 4.66.1 to 4.66.3
#271
dependabot[bot]
closed
6 months ago
0
Clarify the reusability of the tutorial code
#270
hyanwong
closed
2 months ago
4
Update apt
#269
benjeffery
closed
1 year ago
0
Make sure the tree seq matches the text
#268
hyanwong
closed
1 year ago
3
Add a metadata schema for populations
#267
hyanwong
closed
1 year ago
0
Fill out topology counting tutorial
#266
hyanwong
closed
1 year ago
2
Final minor tweaks to ARG tute
#265
hyanwong
closed
1 year ago
1
Add a graph plot into "What is a tree sequence"
#264
hyanwong
opened
1 year ago
2
Mention the words "ancestral" and "genealogy" at the top
#263
hyanwong
closed
1 year ago
0
Make ARG viz order nicer
#262
hyanwong
closed
1 year ago
0
Put a picture on the tutorial welcome page
#261
hyanwong
closed
1 year ago
0
Arg viz
#260
hyanwong
closed
1 year ago
4
Update README.md with new url
#259
hyanwong
closed
1 year ago
0
Update phylogen.md
#258
hyanwong
closed
1 year ago
0
Update deps and theme
#257
benjeffery
closed
1 year ago
0
Pin jsonschema
#256
benjeffery
closed
1 year ago
0
Minor correction to avoid warning
#255
hyanwong
closed
1 year ago
1
Fill out the forward simulation tutorial
#254
hyanwong
closed
1 year ago
0
Typo arg
#253
hyanwong
closed
1 year ago
0
Fix build and update to latest theme
#252
benjeffery
closed
1 year ago
0
Move "Starting with a prior history" from old wfforward NB to completing_forward_sims.md
#251
hyanwong
opened
1 year ago
0
Make WF example simpler
#250
hyanwong
closed
1 year ago
5
Basic forward-time simulation tute
#249
hyanwong
closed
1 year ago
1
Bump certifi from 2022.12.7 to 2023.7.22
#248
dependabot[bot]
closed
1 year ago
2
Update metadata.md
#247
hyanwong
closed
1 year ago
1
Bump pygments from 2.14.0 to 2.15.0
#246
dependabot[bot]
closed
1 year ago
1
Builds failing due to scikit-allel
#245
hyanwong
closed
1 year ago
1
Correct bug in args.md
#244
hyanwong
closed
1 year ago
0
Add null model rationale
#243
hyanwong
closed
1 year ago
7
A question about the tutorial of simplify()
#241
fatlonggg
closed
1 year ago
5
Statgen specific tutorial
#240
hyanwong
opened
1 year ago
0
A TODO in the "for phylogenetics" is now done: remove comment
#239
hyanwong
closed
1 year ago
2
Bump tornado from 6.2 to 6.3.2
#238
dependabot[bot]
closed
1 year ago
0
Bump requests from 2.28.2 to 2.31.0
#237
dependabot[bot]
closed
1 year ago
0
Remove links to solved issues
#236
hyanwong
closed
1 year ago
0
Add ARG traversal examples
#235
hyanwong
closed
1 year ago
0
Add a link to the discussion forums.
#234
hyanwong
closed
1 year ago
0
Tutorial on edge_diffs / incremental algorithms
#233
hyanwong
opened
1 year ago
1
Bump markdown-it-py from 1.1.0 to 2.2.0
#232
dependabot[bot]
closed
1 year ago
1
Bump ipython from 8.8.0 to 8.10.0
#231
dependabot[bot]
closed
1 year ago
0
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