Tutorials for tskit in other languages (C & Rust)

[hyanwong]

We have a fully functional short tskit & R tutorial. I wonder if it's worth having a part of the tutorials book on other languages and include a (short) C example and a Rust example? I'm guessing @molpopgen would be the one to do this, if he has any time.

[jeromekelleher]

Certainly a C one would be nice. We can adapt some of the content in the C API page.

[petrelharp]

Hah, for a moment I thought this meant eg in spanish, and wondered why the first spanish tutorial would be about rust.

[hyanwong]

Cierto en Espagnol. Moi je peux traduire en Français si vous voulez :)

[molpopgen]

I can do one for the rust interface. Unfortunately (IMO) I think it has to be a notebook rather than myst-md. The way one specifies the dependencies for a rust notebook is not allowed in the markdown. I've know this for a while but haven't had the time to figure out where to file the issue (jupyter-book or the rust kernel authors, or both, or neither).

This is low on the short-term priority list, though.

[hyanwong]

This is low on the short-term priority list, though.

Yes, absolutely. I only opened this issue so as not to forget it. We could either leave it as an open issue or make a tutorial stub and just fill it with a "todo"

[molpopgen]

To follow up on this (which some recent Slack posts reminded me of): a literate tutorial for tskit-rust is unlikely unless we start using RMarkdown/knitr. I recently closed a PR based on mdbook due to the amount of work required. The current goal is to get a working example for all elements of the public API. An example is here and the next release will have many more. But it is slow to get it all done.

EDIT: sigh, it looks like Rmd/rextendr are still tricky to get working.

[molpopgen]

For posterity:

---
title: "tskit-rust tutorial"
author: Kevin Thornton / tskit-developers
output: html_document
---

```{r, echo=FALSE}
library(rextendr)

Adding a node to a TableCollection.

``{extendr engine.opts = list(dependencies = list(tskit` = "0.9.0"))} let mut tables = tskit::TableCollection::new(100.0).unwrap();

// Node flags, birth time, population id, individual id let node_id = tables.add_node(0, 0.0, tskit::PopulationId::NULL, tskit::IndividualId::NULL).unwrap();

// The type tskit::NodeId can be compared to i32 assert_eq!(node_id, 0);