tskit-dev / what-is-an-arg-paper

Manuscript and code for the "What is an ARG?" paper
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Adding tables for gARG #348 and other bits #381

Closed gregorgorjanc closed 1 year ago

gregorgorjanc commented 1 year ago

I have added table for gARG to address #348.

I have also added labels for all sections. To the best of my ability, I replaced all see Section XXX or see Appendix XXX with section labels. For this to make sense, I switched from \section*{} to \section{}. Otherwise there is no section number to refer to and LaTeX produces see Section _blank_.

I have also sorted Appendix Figure and Table style to AX, where X is a number. It's easy to change to SX but since we talk about appendices I used AX.

jeromekelleher commented 1 year ago

LGTM, thanks Gregor.

I'd been holding off on doing cross-refs because biologists seem to have some basis mistrust of numbered hierarchical documents, and journals insist on referring to sections by name. Using the automatic "nameref" (or whatever it is) never works properly, as there's always some cludgy phrasing as a result, so I was just going to go through at the end and fix it up.

However, I much prefer this way of doing it, so let's just stick with this for the preprint and review, and deal with meeting daft formatting requirements later!