We have no real detail on how the example ARGs fig was generated. Things to address
Details of the dataset (how many sites, etc, where did we get it?)
Version numbers of programs?
What we did to the outputs to turn into tskit gARGs?
This can go in its own paragraph.
Comment from @gregorgorjanc:
We should say how this figure was obtained - I mean, software was run, but every tool produces something different so what was done to represent a comparable gARG figure across methods?
We have no real detail on how the example ARGs fig was generated. Things to address
This can go in its own paragraph.
Comment from @gregorgorjanc: